Theys, Kristof: search on Z-Library

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1

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes

Fonseca, Vagner, Libin, Pieter J. K., Theys, Kristof, Faria, Nuno R., Nunes, Marcio R. T., Restovic, Maria I., Freire, Murilo, Giovanetti, Marta, Cuypers, Lize, Nowé, Ann, Abecasis, Ana, Deforche, Koe

Journal:

PLoS Neglected Tropical Diseases

Year:

2019

Language:

english

File:

PDF, 2.67 MB

english, 2019

2

Characterization of Nucleoside Reverse Transcriptase Inhibitor-Associated Mutations in the RNase H Region of HIV-1 Subtype C Infected Individuals

Ngcapu, Sinaye, Theys, Kristof, Libin, Pieter, Marconi, Vincent, Sunpath, Henry, Ndung’u, Thumbi, Gordon, Michelle

Journal:

Year:

2017

Language:

english

File:

PDF, 733 KB

english, 2017

3

The impact of HIV-1 within-host evolution on transmission dynamics

Theys, Kristof, Libin, Pieter, Pineda-Peña, Andrea-Clemencia, Nowé, Ann, Vandamme, Anne-Mieke, Abecasis, Ana B

Journal:

Current Opinion in Virology

Year:

2018

Language:

english

File:

PDF, 888 KB

english, 2018

4

Genetic Diversity and Selective Pressure in Hepatitis C Virus Genotypes 1–6: Significance for Direct-Acting Antiviral Treatment and Drug Resistance

Cuypers, Lize, Li, Guangdi, Libin, Pieter, Piampongsant, Supinya, Vandamme, Anne-Mieke, Theys, Kristof

Journal:

Year:

2015

Language:

english

File:

PDF, 1.99 MB

english, 2015

5

HIV-1 drug resistance: where do polymorphisms fit in?

Theys, Kristof, Abecasis, Ana B, Vandamme, Anne-Mieke

Journal:

Future Microbiology

Year:

2013

Language:

english

File:

PDF, 576 KB

english, 2013

6

Advances in Visualization Tools for Phylogenomic and Phylodynamic Studies of Viral Diseases

Theys, Kristof, Lemey, Philippe, Vandamme, Anne-Mieke, Baele, Guy

Journal:

Frontiers in Public Health

Year:

2019

Language:

english

File:

PDF, 5.30 MB

english, 2019

7

Time to Harmonize Dengue Nomenclature and Classification

Cuypers, Lize, Libin, Pieter, Simmonds, Peter, Nowé, Ann, Muñoz-Jordán, Jorge, Alcantara, Luiz, Vandamme, Anne-Mieke, Santiago, Gilberto, Theys, Kristof

Journal:

Year:

2018

Language:

english

File:

PDF, 379 KB

english, 2018

8

[IEEE 2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI) - Portland, OR, USA (2019.11.4-2019.11.6)] 2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI) - Bayesian Anytime m-top Exploration

Libin, Pieter, Verstraeten, Timothy, Roijers, Diederik M., Wang, Wenjia, Theys, Kristof, Nowe, Ann

Year:

2019

Language:

english

File:

PDF, 566 KB

english, 2019

9

Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients

Kristof Theys, Koen Deforche, Jurgen Vercauteren, Pieter Libin, David AMC van de Vijver, Jan Albert, Birgitta Åsjö, Claudia Balotta, Marie Bruckova, Ricardo J Camacho, Bonaventura Clotet, Suzie Coughl

Journal:

Year:

2012

Language:

english

File:

PDF, 259 KB

english, 2012

10

Sub-epidemics explain localized high prevalence of reduced susceptibility to rilpivirine in treatment-naive HIV-1 infected patients: subtype- and geographic compartmentalization of baseline resistance mutations

Theys, Kristof, Van Laethem, Kristel, Gomes, Perpetua, Baele, Guy, Pineda-Peña, Andrea-Clemencia, Vandamme, Anne-Mieke, Camacho, Ricardo J., Abecasis, Ana B.

Journal:

AIDS Research and Human Retroviruses

Year:

2015

Language:

english

File:

PDF, 788 KB

english, 2015

11

A new ensemble coevolution system for detecting HIV-1 protein coevolution

Li, Guangdi, Theys, Kristof, Verheyen, Jens, Pineda-Peña, Andrea-Clemencia, Khouri, Ricardo, Piampongsant, Supinya, Eusébio, Mónica, Ramon, Jan, Vandamme, Anne-Mieke

Journal:

Year:

2015

Language:

english

File:

PDF, 2.59 MB

english, 2015

12

SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination

Jariani, Abbas, Warth, Christopher, Deforche, Koen, Libin, Pieter, Drummond, Alexei J, Rambaut, Andrew, Matsen IV, Frederick A, Theys, Kristof

Journal:

Virus Evolution

Year:

2019

File:

PDF, 596 KB

2019

13

ID: 239

Khouri, Ricardo, Decanine, Daniele, Silva-Santos, Gilvaneia, Theys, Kristof, Li, Guangdi, Silva, Aline Clara, Farre, Lourdes, Bittencourt, Achilea, Mangino, Massimo, Roederer, Mario, Van Weyenbergh, J

Journal:

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

14

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Libin, Pieter, Deforche, Koen, Abecasis, Ana B, Theys, Kristof, Hancock, John

Journal:

Year:

2018

Language:

english

File:

PDF, 265 KB

english, 2018

15

The incidence of multidrug and full class resistance in HIV-1 infected patients is decreasing over time (2001–2006) in Portugal

Jurgen Vercauteren, Koen Deforche, Kristof Theys, Michiel Debruyne, Luis Miguel Duque, Susana Peres, Ana Patricia Carvalho, Kamal Mansinho, Anne-Mieke Vandamme, Ricardo Camacho

Journal:

Year:

2008

Language:

english

File:

PDF, 284 KB

english, 2008

16

HIV-1 fitness landscape models for indinavir treatment pressure using observed evolution in longitudinal sequence data are predictive for treatment failure

Sangeda, Raphael Z., Theys, Kristof, Beheydt, Gertjan, Rhee, Soo-Yon, Deforche, Koen, Vercauteren, Jurgen, Libin, Pieter, Imbrechts, Stijn, Grossman, Zehava, Camacho, Ricardo J., Van Laethem, Kristel,

Journal:

Infection, Genetics and Evolution

Year:

2013

Language:

english

File:

PDF, 739 KB

english, 2013

17

HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012

Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Stylianou, Dora C., Demetriades, Ioannis, Abecasis, Ana B., Kostrikis, Leondios G.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.53 MB

english, 2018

18

HIV-1 genotypic drug resistance testing: digging deep, reaching wide?

Van Laethem, Kristel, Theys, Kristof, Vandamme, Anne-Mieke

Journal:

Current Opinion in Virology

Year:

2015

Language:

english

File:

PDF, 395 KB

english, 2015

19

HIV-1 Gag C-terminal amino acid substitutions emerging under selective pressure of protease inhibitors in patient populations infected with different HIV-1 subtypes

Li, Guangdi, Verheyen, Jens, Theys, Kristof, Piampongsant, Supinya, Van Laethem, Kristel, Vandamme, Anne-Mieke

Journal:

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

20

An integrated map of HIV genome-wide variation from a population perspective

Li, Guangdi, Piampongsant, Supinya, Faria, Nuno Rodrigues, Voet, Arnout, Pineda-Peña, Andrea-Clemencia, Khouri, Ricardo, Lemey, Philippe, Vandamme, Anne-Mieke, Theys, Kristof

Journal:

Year:

2015

Language:

english

File:

PDF, 2.84 MB

english, 2015

21

Epidemic dispersion of HIV and HCV in a population of co-infected Romanian injecting drug users

Paraschiv, Simona, Banica, Leontina, Nicolae, Ionelia, Niculescu, Iulia, Abagiu, Adrian, Jipa, Raluca, Pineda-Peña, Andrea-Clemencia, Pingarilho, Marta, Neaga, Emil, Theys, Kristof, Libin, Pieter, Ote

Journal:

Year:

2017

Language:

english

File:

PDF, 4.49 MB

english, 2017

22

Increasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations

Pingarilho, Marta, Pimentel, Victor, Diogo, Isabel, Fernandes, Sandra, Miranda, Mafalda, Pineda-Pena, Andrea, Libin, Pieter, Theys, Kristof, O. Martins, M., Vandamme, Anne-Mieke, Camacho, Ricardo, Gom

Journal:

Year:

2020

File:

PDF, 5.09 MB

2020

23

HIV-1 gp120 N-linked glycosylation differs between plasma and leukocyte compartments

Yung Shwen Ho, Ana B Abecasis, Kristof Theys, Koen Deforche…

Journal:

Virology Journal

Year:

2008

Language:

english

File:

PDF, 751 KB

english, 2008

24

Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape

Kristof Theys, Koen Deforche, Gertjan Beheydt, Yves Moreau, Kristel van Laethem, Philippe Lemey, Ricardo J Camacho, Soo-Yon Rhee, Robert W Shafer, Eric Van Wijngaerden, Anne-Mieke Vandamme

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 284 KB

english, 2010

25

Zika genomics urgently need standardized and curated reference sequences

Theys, Kristof, Libin, Pieter, Dallmeier, Kai, Pineda-Peña, Andrea-Clemencia, Vandamme, Anne-Mieke, Cuypers, Lize, Abecasis, Ana B., Coyne, Carolyn B

Journal:

Year:

2017

Language:

english

File:

PDF, 446 KB

english, 2017

26

An evolutionary-based approach to quantify the genetic barrier to drug resistance in fast-evolving viruses: an application to HIV-1 subtypes and integrase inhibitors.

Theys, Kristof, Libin, Pieter J. K., Van Laethem, Kristel, Abecasis, Ana B

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2019

Language:

english

File:

PDF, 3.18 MB

english, 2019

27

IFN-beta pro-apoptotic and antiproliferative activity is superior to IFN-alpha in adult T-cell leukemia: Ex vivo response predicts survival

Johan Van Weyenbergh, Ricardo Khouri, Daniele Decanine, Kristof Theys, Koen Deforche, Aline Clara Silva, Lourdes Farre, Achilea Bittencourt, Anne-Mieke Vandamme

Journal:

Year:

2009

Language:

english

File:

PDF, 59 KB

english, 2009

28

CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba

Kouri, Vivian, Khouri, Ricardo, Alemán‬, Yoan, Abrahantes, Yeissel, Vercauteren, Jurgen, Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Megens, Sarah, Moutschen, Michel, Pfeifer, Nico, Van Weyenbergh,

Journal:

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

29

Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals

Winand, Raf, Theys, Kristof, Eusébio, Mónica, Aerts, Jan, Camacho, Ricardo J., Gomes, Perpetua, Suchard, Marc A., Vandamme, Anne-Mieke, Abecasis, Ana B.

Journal:

Year:

2015

Language:

english

File:

PDF, 287 KB

english, 2015

30

On the contribution of Angola to the initial spread of HIV-1

Pineda-Peña, Andrea-Clemencia, Varanda, Jorge, de Sousa, João Dinis, Theys, Kristof, Bártolo, Inês, Leitner, Thomas, Taveira, Nuno, Vandamme, Anne-Mieke, Abecasis, Ana B.

Journal:

Infection, Genetics and Evolution

Year:

2016

Language:

english

File:

PDF, 513 KB

english, 2016

31

A genetic IFN/STAT1/FAS axis determines CD4 T stem cell memory levels and apoptosis in healthy controls and Adult T-cell Leukemia patients

Khouri, Ricardo, Silva-Santos, Gilvanéia, Dierckx, Tim, Menezes, Soraya Maria, Decanine, Daniele, Theys, Kristof, Silva, Aline Clara, Farré, Lourdes, Bittencourt, Achiléa, Mangino, Massimo, Roederer,

Journal:

Year:

2018

Language:

english

File:

PDF, 3.58 MB

english, 2018

32

An evolutionary-based approach to quantify the genetic barrier to drug resistance in fast-evolving viruses: an application to HIV-1 subtypes and integrase inhibitors.

Theys, Kristof, Libin, Pieter J. K., Van Laethem, Kristel, Abecasis, Ana B

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2019

File:

PDF, 3.18 MB

2019

33

The rise and fall of K65R in a Portuguese HIV-1 Drug Resistance database, despite continuously increasing use of tenofovir

Kristof Theys, Jurgen Vercauteren, Ana B. Abecasis, Pieter Libin, Koen Deforche, Anne-Mieke Vandamme, Ricardo Camacho

Journal:

Infection, Genetics and Evolution

Year:

2009

Language:

english

File:

PDF, 199 KB

english, 2009

34

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context

Libin, Pieter, Vanden Eynden, Ewout, Incardona, Francesca, Nowé, Ann, Bezenchek, Antonia, Sönnerborg, Anders, Vandamme, Anne-Mieke, Theys, Kristof, Baele, Guy, Kelso, Janet

Journal:

Year:

2017

Language:

english

File:

PDF, 160 KB

english, 2017

35

Patient empowerment in Flemish hospital wards: a cross-sectional study

Theys, Sofie, Malfait, Simon, Eeckloo, Kristof, Verhaeghe, Sofie, Beeckman, Dimitri, Van Hecke, Ann

Journal:

Acta Clinica Belgica

Year:

2020

File:

PDF, 1.23 MB

2020

36

Lack of evidence for the selection of E138 mutations by first-generation non-nucleoside reverse transcriptase inhibitors in patients infected with HIV-1 non-B subtypes

Abecasis, Ana B., van Laethem, Kristel, Theys, Kristof

Journal:

Year:

2015

Language:

english

File:

PDF, 394 KB

english, 2015

37

Exploring resistance pathways for first-generation NS3/4A protease inhibitors boceprevir and telaprevir using Bayesian network learning

Cuypers, Lize, Libin, Pieter, Schrooten, Yoeri, Theys, Kristof, Di Maio, Velia Chiara, Cento, Valeria, Lunar, Maja M., Nevens, Frederik, Poljak, Mario, Ceccherini-Silberstein, Francesca, Nowé, Ann, Va

Journal:

Infection, Genetics and Evolution

Year:

2017

Language:

english

File:

PDF, 993 KB

english, 2017

38

A Bayesian network approach to study host and viral genetic correlates of HIV-1 disease progression

Joke Snoek, Concepción Casado, Sara Colombo, Andri Rauch, Soledad García, Raquel Martinez, Kristof Theys, Ricardo Khouri, Huldrych F Günthard, Amalio Telenti, Cecilio López-Galíndez, Anne-Mieke Vandam

Journal:

Year:

2011

Language:

english

File:

PDF, 85 KB

english, 2011

39

Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

Theys, Kristof, Feder, Alison F., Gelbart, Maoz, Hartl, Marion, Stern, Adi, Pennings, Pleuni S., Bloom, Jesse D

Journal:

Year:

2018

Language:

english

File:

PDF, 3.50 MB

english, 2018

40

Barriers and enablers for the implementation of a hospital communication tool for patient participation: A qualitative study

Theys, Sofie, Lust, Elisa, Heinen, Maud, Verhaeghe, Sofie, Beeckman, Dimitri, Eeckloo, Kristof, Malfait, Simon, Van Hecke, Ann

Journal:

Journal of Clinical Nursing

Year:

2019

Language:

english

File:

PDF, 1.28 MB

english, 2019

41

Discordant predictions of residual activity could impact dolutegravir prescription upon raltegravir failure

Theys, Kristof, Abecasis, Ana, Libin, Pieter, Gomes, Perpétua, Cabanas, Joaquim, Camacho, Ricardo J., Van Laethem, Kristel

Journal:

Journal of Clinical Virology

Year:

2015

Language:

english

File:

PDF, 829 KB

english, 2015

42

Mapping the genomic diversity of HCV subtypes 1a and 1b: Implications of structural and immunological constraints for vaccine and drug development

Cuypers, Lize, Li, Guangdi, Neumann-Haefelin, Christoph, Piampongsant, Supinya, Libin, Pieter, Van Laethem, Kristel, Vandamme, Anne-Mieke, Theys, Kristof

Journal:

Virus Evolution

Year:

2016

Language:

english

File:

PDF, 1.73 MB

english, 2016

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